Upgrading Julia and IJulia on Linux

This is a short note on how to swiftly update Julia and IJulia (the kernel to work with Jupyter notebooks) when a new minor version is released. The following instructions are for Linux, with the example of upgrading from version 1.1 to version 1.2.

(remark: the existing StackOverflow question “How to upgrade Julia to a new release?” is very outdated, as of September 2019, and doesn’t cover Jupyter kernels)

Step 1: dowload

Download the latest binary release: https://julialang.org/downloads/ and unpack it. For me: ~/Programmes/others/julia-1.2.0

Step 2: update $PATH

Update path to the Julia binary which is prepended to the $PATH variable in the ~/.bashrc file:

export PATH="/home/pierre/Programmes/others/julia-1.2.0/bin:$PATH"

Test in the shell command line: the julia command should now launch the new Julia REPL (at least after a shell restart).

Step 3: reinstall (and update) packages

Objective here is to reuse all the previously installed packages without the need to remember their names.

In the ~/.julia/environments directory, copy the Project.toml file from the previous version directory (ex: v1.1) and paste it in a directory named as the new version (ex: v1.2).

Now, in the Julia REPL, enter the Pkg REPL (pressing ]) and run update. If there is no new package version, there is no actual download happening. However, compiled packages like IJulia should be rebuilt.

Test: assuming that the IJulia packaged was included in Project.toml, the new Julia version should be available as a Jupyter kernel in the lab/notebook interface.

Step 4: clean up the old Jupyter kernel

In the ~/.local/share/jupyter/kernels directory, there should be at least two directories: the one for the old Jupyter kernel (ex: julia-1.1) and the one for the new kernel (ex: julia-1.2). If the old kernel is not needed, it can be removed.

Notice: the kernel directories can be found with the $jupyter kernelspec list command.

(The directory of the old Julia binary can be deleted as well.)